3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00289

Details:

PFam ID : PF00289

PFam Domain Description : Carbamoyl-phosphate synthase L chain, N-terminal domain

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 4308

Average sequence length: 109.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00289	A7HEG5_ANADF_7_109	12.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00289	E8C8Q5_SALMO_11_85	100

Sequence based PCA Plot of the family - PF00289 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=46 Length=8
Motif2 Start=121 Length=8
Motif3 Start=4 Length=17
Motif4 Start=97 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay