3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00288

Details:

PFam ID : PF00288

PFam Domain Description : GHMP kinases N terminal domain

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 3888

Average sequence length: 64.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00288	C4V9V3_NOSCE_102_177	53.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00288	Q8EU93_MYCPE_94_156	92.4

Sequence based PCA Plot of the family - PF00288 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=27 Length=8
Motif2 Start=9 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay