3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00286

Details:

PFam ID : PF00286

PFam Domain Description : Carlavirus coat

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 126

Average sequence length: 125.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00286	A8C5N6_9VIRU_219_358	86.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00286	A8C5N6_9VIRU_219_358	100

Sequence based PCA Plot of the family - PF00286 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=127 Length=11
Motif3 Start=76 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay