3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00283

Details:

PFam ID : PF00283

PFam Domain Description : Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 134

Average sequence length: 27.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00283	C8CSH6_PINMO_17_34	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00283	A0ZI38_NODSP_1_18	75

Sequence based PCA Plot of the family - PF00283 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay