3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00275

Details:

PFam ID : PF00275

PFam Domain Description : EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Number of Sequence in 50% Dataset : 277

Number of Sequence in Full Dataset : 2874

Average sequence length: 381.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00275	A7XYN1_CHLTR_1_186	85.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00275	B4V008_9ACTO_1_281	100

Sequence based PCA Plot of the family - PF00275 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay