3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00274

Details:

PFam ID : PF00274

PFam Domain Description : Fructose-bisphosphate aldolase class-I

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 655

Average sequence length: 254.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00274	Q41992_ARATH_1_70	44.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00274	B5KBF8_9RHOB_1_100	94.4

Sequence based PCA Plot of the family - PF00274 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=286 Length=8
Motif2 Start=343 Length=8
Motif3 Start=322 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay