3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00272

Details:

PFam ID : PF00272

PFam Domain Description : Cecropin family

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 67

Average sequence length: 29.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00272	E1FZS1_LOALO_241_333	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00272	Q5W8G6_ACALU_25_51	96.9

Sequence based PCA Plot of the family - PF00272 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay