3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00271

Details:

PFam ID : PF00271

PFam Domain Description : Helicase conserved C-terminal domain

Number of Sequence in 50% Dataset : 499

Number of Sequence in Full Dataset : 21871

Average sequence length: 80.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00271	E1FZS1_LOALO_241_333	86.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00271	E1F349_GIAIA_404_474	98.3

Sequence based PCA Plot of the family - PF00271 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=130 Length=8
Motif3 Start=165 Length=14
Motif4 Start=194 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay