3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00267

Details:

PFam ID : PF00267

PFam Domain Description : Gram-negative porin

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 443

Average sequence length: 291.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00267	A6WPE2_SHEB8_66_191	64.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00267	C1D5Y8_LARHH_25_374	98.4

Sequence based PCA Plot of the family - PF00267 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=205 Length=8
Motif3 Start=65 Length=8
Motif4 Start=269 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay