3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00266

Details:

PFam ID : PF00266

PFam Domain Description : Aminotransferase class-V

Number of Sequence in 50% Dataset : 1012

Number of Sequence in Full Dataset : 8237

Average sequence length: 330.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00266	D1ZYW5_SORMK_145_255	84.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00266	E9E7L7_METAQ_92_275	99.5

Sequence based PCA Plot of the family - PF00266 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=18
Motif2 Start=30 Length=11
Motif3 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay