3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00265

Details:

PFam ID : PF00265

PFam Domain Description : Thymidine kinase

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 737

Average sequence length: 176.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00265	B0ER59_ENTDI_76_190	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00265	E3NQ81_CAERE_70_133	100

Sequence based PCA Plot of the family - PF00265 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=136 Length=8
Motif2 Start=77 Length=8
Motif3 Start=169 Length=8
Motif4 Start=4 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay