3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00264

Details:

PFam ID : PF00264

PFam Domain Description : Common central domain of tyrosinase

Number of Sequence in 50% Dataset : 283

Number of Sequence in Full Dataset : 1087

Average sequence length: 184.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00264	A9TFU4_PHYPA_16_170	99.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00264	C7YL06_NECH7_72_417	100

Sequence based PCA Plot of the family - PF00264 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=33 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay