3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00263

Details:

PFam ID : PF00263

PFam Domain Description : Bacterial type II and III secretion system protein

Number of Sequence in 50% Dataset : 361

Number of Sequence in Full Dataset : 1692

Average sequence length: 162.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00263	D6L8B5_9FUSO_341_407	92.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00263	F0E931_9PSED_220_310	100

Sequence based PCA Plot of the family - PF00263 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=55 Length=8
Motif3 Start=14 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay