3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00262

Details:

PFam ID : PF00262

PFam Domain Description : Calreticulin family

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 349

Average sequence length: 279.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00262	C5DSI7_ZYGRC_41_425	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00262	F0J8W7_AMBVA_46_175	100

Sequence based PCA Plot of the family - PF00262 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=11
Motif2 Start=35 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay