3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00258

Details:

PFam ID : PF00258

PFam Domain Description : Flavodoxin-like fold

Number of Sequence in 50% Dataset : 294

Number of Sequence in Full Dataset : 2704

Average sequence length: 136.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00258	A4NYY9_HAEIF_6_79	83.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00258	D3PVM7_STANL_5_93	99.9

Sequence based PCA Plot of the family - PF00258 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=111 Length=8
Motif2 Start=62 Length=8
Motif3 Start=96 Length=11
Motif4 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay