3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00255

Details:

PFam ID : PF00255

PFam Domain Description : Glutathione peroxidase

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 1393

Average sequence length: 103.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00255	C1MJ70_MICPC_119_279	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00255	A9V8Q4_MONBE_366_503	100

Sequence based PCA Plot of the family - PF00255 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=18 Length=14
Motif2 Start=108 Length=23
Motif3 Start=58 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay