3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00254

Details:

PFam ID : PF00254

PFam Domain Description : Domain amino terminal to FKBP-type peptidyl-prolyl isomerase

Number of Sequence in 50% Dataset : 501

Number of Sequence in Full Dataset : 4786

Average sequence length: 101.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00254	C1MJ70_MICPC_119_279	64.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00254	C5FWL9_ARTOC_13_176	99.7

Sequence based PCA Plot of the family - PF00254 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=80 Length=8
Motif2 Start=67 Length=8
Motif3 Start=50 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay