3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00251

Details:

PFam ID : PF00251

PFam Domain Description : Glycosyl hydrolases family 32 N-terminal domain

Number of Sequence in 50% Dataset : 232

Number of Sequence in Full Dataset : 1382

Average sequence length: 278.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00251	D9T901_MICAI_11_146	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00251	E4ZNM6_LEPMC_13_254	99.8

Sequence based PCA Plot of the family - PF00251 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=106 Length=8
Motif2 Start=89 Length=11
Motif3 Start=77 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay