3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00249

Details:

PFam ID : PF00249

PFam Domain Description : Myb-like DNA-binding domain

Number of Sequence in 50% Dataset : 141

Number of Sequence in Full Dataset : 3445

Average sequence length: 46.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00249	E4YX73_OIKDI_286_330	98.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00249	B6AC88_CRYMR_147_210	97.0

Sequence based PCA Plot of the family - PF00249 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay