3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00248

Details:

PFam ID : PF00248

PFam Domain Description : Aldo/keto reductase family

Number of Sequence in 50% Dataset : 1246

Number of Sequence in Full Dataset : 9968

Average sequence length: 266.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00248	F0YG06_9STRA_787_875	87.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00248	D2VND7_NAEGR_69_218	99.9

Sequence based PCA Plot of the family - PF00248 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=66 Length=8
Motif3 Start=52 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay