3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00246

Details:

PFam ID : PF00246

PFam Domain Description : Zinc carboxypeptidase

Number of Sequence in 50% Dataset : 537

Number of Sequence in Full Dataset : 2285

Average sequence length: 248.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00246	D2A5G1_TRICA_1_205	90.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00246	F0VJ34_NEOCA_75_352	99.6

Sequence based PCA Plot of the family - PF00246 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8
Motif4 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay