3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00245

Details:

PFam ID : PF00245

PFam Domain Description : Alkaline phosphatase

Number of Sequence in 50% Dataset : 197

Number of Sequence in Full Dataset : 1043

Average sequence length: 353.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00245	C2CT06_CORST_67_168	65.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00245	B8RIW1_CULTA_2_103	100

Sequence based PCA Plot of the family - PF00245 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=20
Motif2 Start=511 Length=8
Motif3 Start=309 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay