3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00243

Details:

PFam ID : PF00243

PFam Domain Description : Nerve growth factor family

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 104

Average sequence length: 88.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00243	E3T985_LIABU_127_162	20.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00243	B7P9R7_IXOSC_2_67	99.0

Sequence based PCA Plot of the family - PF00243 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=24
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay