3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00242

Details:

PFam ID : PF00242

PFam Domain Description : DNA polymerase (viral) N-terminal domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 146

Average sequence length: 184.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00242	D2X4R6_HBV_157_195	41.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00242	A5JJ30_HBV_1_51	100

Sequence based PCA Plot of the family - PF00242 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay