3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00241

Details:

PFam ID : PF00241

PFam Domain Description : Cofilin/tropomyosin-type actin-binding protein

Number of Sequence in 50% Dataset : 211

Number of Sequence in Full Dataset : 913

Average sequence length: 122.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00241	ADF1_CAEEL_154_207	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00241	Q5K6Q9_CRAGI_1_72	100

Sequence based PCA Plot of the family - PF00241 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay