3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00240

Details:

PFam ID : PF00240

PFam Domain Description : Ubiquitin family

Number of Sequence in 50% Dataset : 568

Number of Sequence in Full Dataset : 2478

Average sequence length: 66.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00240	Q69QR0_ORYSJ_7_55	50.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00240	A0CD17_PARTE_151_215	100

Sequence based PCA Plot of the family - PF00240 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=8
Motif2 Start=12 Length=18
Motif3 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay