3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00236

Details:

PFam ID : PF00236

PFam Domain Description : Glycoprotein hormone

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 50

Average sequence length: 92.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00236	D3G8E2_PETMA_11_96	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00236	D3G8E2_PETMA_11_96	100

Sequence based PCA Plot of the family - PF00236 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=21
Motif3 Start=76 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay