3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00233

Details:

PFam ID : PF00233

PFam Domain Description : 3'5'-cyclic nucleotide phosphodiesterase

Number of Sequence in 50% Dataset : 259

Number of Sequence in Full Dataset : 712

Average sequence length: 207.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00233	B8C8W4_THAPS_20_173	86.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00233	C1N6Y6_MICPC_95_388	100

Sequence based PCA Plot of the family - PF00233 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay