3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00232

Details:

PFam ID : PF00232

PFam Domain Description : Glycosyl hydrolase family 1

Number of Sequence in 50% Dataset : 340

Number of Sequence in Full Dataset : 2866

Average sequence length: 364.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00232	E7GYG6_STRAP_1_52	92.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00232	B9G1Q7_ORYSJ_115_195	100

Sequence based PCA Plot of the family - PF00232 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=20 Length=8
Motif3 Start=38 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay