3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00231

Details:

PFam ID : PF00231

PFam Domain Description : ATP synthase

Number of Sequence in 50% Dataset : 212

Number of Sequence in Full Dataset : 1381

Average sequence length: 276.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00231	Q4A5U4_MYCS5_1_279	83.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00231	Q1IIG7_ACIBL_2_345	100

Sequence based PCA Plot of the family - PF00231 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=1 Length=11
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay