3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00230

Details:

PFam ID : PF00230

PFam Domain Description : Major intrinsic protein

Number of Sequence in 50% Dataset : 317

Number of Sequence in Full Dataset : 2484

Average sequence length: 205.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00230	D7SNQ4_VITVI_1_118	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00230	D7SNQ4_VITVI_1_118	99.9

Sequence based PCA Plot of the family - PF00230 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=55 Length=8
Motif3 Start=24 Length=8
Motif4 Start=72 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay