3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00229

Details:

PFam ID : PF00229

PFam Domain Description : TNF(Tumour Necrosis Factor) family

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 284

Average sequence length: 116.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00229	B6RQX8_THUOR_4_87	87.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00229	Q2I7F3_ONCMY_104_257	100

Sequence based PCA Plot of the family - PF00229 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=30 Length=8
Motif3 Start=55 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay