3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00226

Details:

PFam ID : PF00226

PFam Domain Description : DnaJ domain

Number of Sequence in 50% Dataset : 472

Number of Sequence in Full Dataset : 9100

Average sequence length: 62.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00226	A9V9H8_MONBE_21_63	87.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00226	B7FNU2_PHATC_318_404	99.9

Sequence based PCA Plot of the family - PF00226 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=50 Length=11
Motif3 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay