3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00225

Details:

PFam ID : PF00225

PFam Domain Description : Kinesin motor domain

Number of Sequence in 50% Dataset : 876

Number of Sequence in Full Dataset : 3390

Average sequence length: 279.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00225	Q99PU2_MOUSE_2_130	85.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00225	C1FEW5_MICSR_471_535	100

Sequence based PCA Plot of the family - PF00225 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=228 Length=17
Motif2 Start=437 Length=32
Motif3 Start=316 Length=23
Motif4 Start=368 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay