3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00221

Details:

PFam ID : PF00221

PFam Domain Description : Aromatic amino acid lyase

Number of Sequence in 50% Dataset : 124

Number of Sequence in Full Dataset : 898

Average sequence length: 426.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00221	D6X8R8_STRPR_93_406	69.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00221	Q4P054_USTMA_43_617	100

Sequence based PCA Plot of the family - PF00221 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=164 Length=8
Motif3 Start=137 Length=8
Motif4 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay