3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00219

Details:

PFam ID : PF00219

PFam Domain Description : Insulin-like growth factor binding protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 193

Average sequence length: 53.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00219	E4Y4F9_OIKDI_18_91	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00219	C9X4I4_TITDI_21_76	100

Sequence based PCA Plot of the family - PF00219 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=44 Length=11
Motif2 Start=26 Length=17
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay