3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00218

Details:

PFam ID : PF00218

PFam Domain Description : Indole-3-glycerol phosphate synthase

Number of Sequence in 50% Dataset : 104

Number of Sequence in Full Dataset : 1252

Average sequence length: 246.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00218	D8TRX5_VOLCA_62_207	73.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00218	A6EE06_9SPHI_4_87	100

Sequence based PCA Plot of the family - PF00218 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=52 Length=8
Motif3 Start=76 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay