3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00216

Details:

PFam ID : PF00216

PFam Domain Description : Bacterial DNA-binding protein

Number of Sequence in 50% Dataset : 273

Number of Sequence in Full Dataset : 2636

Average sequence length: 88.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00216	D7IQR1_9BACE_1_119	79.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00216	HCC2_CRYCO_11_102	100

Sequence based PCA Plot of the family - PF00216 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=55 Length=11
Motif3 Start=1 Length=8
Motif4 Start=40 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay