3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00215

Details:

PFam ID : PF00215

PFam Domain Description : Orotidine 5'-phosphate decarboxylase / HUMPS family

Number of Sequence in 50% Dataset : 148

Number of Sequence in Full Dataset : 1792

Average sequence length: 220.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00215	B8A965_ORYSI_34_119	83.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00215	E3RNL2_PYRTT_36_363	100

Sequence based PCA Plot of the family - PF00215 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay