3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00214

Details:

PFam ID : PF00214

PFam Domain Description : Calcitonin / CGRP / IAPP family

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 114

Average sequence length: 98.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00214	C8YMC9_SQUAC_1_150	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00214	Q90743_CHICK_1_122	92.0

Sequence based PCA Plot of the family - PF00214 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay