3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00213

Details:

PFam ID : PF00213

PFam Domain Description : ATP synthase delta (OSCP) subunit

Number of Sequence in 50% Dataset : 490

Number of Sequence in Full Dataset : 1501

Average sequence length: 164.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00213	A5MW35_STRPN_3_52	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00213	D2VW14_NAEGR_55_219	100

Sequence based PCA Plot of the family - PF00213 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=141 Length=8
Motif3 Start=191 Length=8
Motif4 Start=173 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay