3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00210

Details:

PFam ID : PF00210

PFam Domain Description : Ferritin-like

Number of Sequence in 50% Dataset : 224

Number of Sequence in Full Dataset : 2585

Average sequence length: 137.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00210	E6MD61_STALU_2_70	82.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00210	D6PDL9_9BACT_13_80	99.8

Sequence based PCA Plot of the family - PF00210 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=4 Length=18
Motif2 Start=128 Length=8
Motif3 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay