3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00208

Details:

PFam ID : PF00208

PFam Domain Description : Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

Number of Sequence in 50% Dataset : 143

Number of Sequence in Full Dataset : 1921

Average sequence length: 220.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00208	B1XJ32_SYNP2_2_142	72.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00208	B8LDH0_THAPS_244_321	99.8

Sequence based PCA Plot of the family - PF00208 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=8 Length=17
Motif3 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay