3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00207

Details:

PFam ID : PF00207

PFam Domain Description : Alpha-2-macroglobulin family

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 683

Average sequence length: 89.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00207	E1IE64_9CHLR_1009_1092	85

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00207	A6GA42_9DELT_1279_1376	100

Sequence based PCA Plot of the family - PF00207 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=18 Length=17
Motif3 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay