3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00206

Details:

PFam ID : PF00206

PFam Domain Description : Lyase

Number of Sequence in 50% Dataset : 165

Number of Sequence in Full Dataset : 4097

Average sequence length: 290.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00206	C5WMD9_SORBI_54_139	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00206	A7GZH6_CAMC5_9_194	99.7

Sequence based PCA Plot of the family - PF00206 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=121 Length=23
Motif2 Start=174 Length=23
Motif3 Start=65 Length=44
Motif4 Start=282 Length=53

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay