3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00205

Details:

PFam ID : PF00205

PFam Domain Description : Thiamine pyrophosphate enzyme, central domain

Number of Sequence in 50% Dataset : 401

Number of Sequence in Full Dataset : 3951

Average sequence length: 134.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00205	A6UM25_SINMW_68_167	92

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00205	B8C5X8_THAPS_191_295	100

Sequence based PCA Plot of the family - PF00205 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=17
Motif2 Start=69 Length=14
Motif3 Start=11 Length=11
Motif4 Start=95 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay