3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00202

Details:

PFam ID : PF00202

PFam Domain Description : Aminotransferase class-III

Number of Sequence in 50% Dataset : 556

Number of Sequence in Full Dataset : 6786

Average sequence length: 319.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00202	B5YMK2_THAPS_180_266	76.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00202	E3L6H8_PUCGT_96_161	100

Sequence based PCA Plot of the family - PF00202 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=182 Length=14
Motif2 Start=345 Length=17
Motif3 Start=274 Length=59
Motif4 Start=253 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay