3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00200

Details:

PFam ID : PF00200

PFam Domain Description : Disintegrin

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 628

Average sequence length: 70.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00200	B3RJQ4_TRIAD_472_572	92.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00200	B3RJQ5_TRIAD_470_523	100

Sequence based PCA Plot of the family - PF00200 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=50 Length=14
Motif2 Start=14 Length=18
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay