3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00199

Details:

PFam ID : PF00199

PFam Domain Description : Catalase

Number of Sequence in 50% Dataset : 126

Number of Sequence in Full Dataset : 1356

Average sequence length: 326.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00199	E5S6I7_TRISP_2_184	68

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00199	B1T1G7_9BURK_23_100	98.2

Sequence based PCA Plot of the family - PF00199 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=14
Motif2 Start=49 Length=8
Motif3 Start=68 Length=8
Motif4 Start=120 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay