3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00198

Details:

PFam ID : PF00198

PFam Domain Description : 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Number of Sequence in 50% Dataset : 216

Number of Sequence in Full Dataset : 2298

Average sequence length: 220.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00198	B1GBG5_9BURK_1_37	75.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00198	D8PLT4_SCHCM_227_502	100

Sequence based PCA Plot of the family - PF00198 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8
Motif3 Start=28 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay